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update Germlinecnvcaller subworkflow #19

Merged
merged 6 commits into from
Mar 28, 2024
Merged

update Germlinecnvcaller subworkflow #19

merged 6 commits into from
Mar 28, 2024

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ramprasadn
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@ramprasadn ramprasadn commented Feb 20, 2024 •
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PR checklist

This PR updates germlinecnvcaller subworkflow so it can handle exome samples

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/createpanelrefs branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@ramprasadn ramprasadn marked this pull request as ready for review February 21, 2024 14:18
@maxulysse maxulysse merged commit 69bccbb into nf-core:dev Mar 28, 2024
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@ramprasadn ramprasadn mentioned this pull request Apr 3, 2024
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@maxulysse maxulysse maxulysse approved these changes

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@ramprasadn @maxulysse